Credits¶
Garnett Developers¶
The following people have contributed to the garnett
package.
Carl Simon Adorf, University of Michigan
- Original Author
- Former Maintainer
- Trajectory classes
- Shapes classes
- Testing framework
- CIF file writer
- DCD file reader
- GSD file reader
- HOOMD XML file reader
- POS file reader
- POS file writer
Richmond Newman, University of Michigan
- Original Author
- POS file reader
Matthew Spellings, University of Michigan
- CIF file reader
- GETAR file reader
Julia Dshemuchadse, University of Michigan
- CIF file writer
Vyas Ramasubramani, University of Michigan
- GSD file writer
Bradley Dice, University of Michigan
- Maintainer
- GETAR file writer
- Support for additional frame properties
- Improved support for parsing and writing particle shapes
- Refactored
types
,typeid
,type_shapes
to match HOOMD conventions- Expanded support for CIF
_atom_site_label
types- Revised API for interfacing with frame data and HOOMD snapshots
Sophie Youjung Lee, University of Michigan
- Former Maintainer
- Universal read and write functions
Luis Y. Rivera-Rivera, University of Michigan
- Maintainer
- Various bugs and documentation fixes/updates
- Implemented error handling for unstored properties
- Improved dimension detection on GTAR and POS readers
- Enabled GSD v2.0.0 compatibility
- Added
box
to loadable trajectory attributes
Kelly Wang, University of Michigan
- Maintainer
Paul Dodd, University of Michigan
Erin Teich, University of Michigan
Pablo Damasceno, University of Michigan
James Proctor, University of Michigan
Jens Glaser, University of Michigan
Mayank Agrawal, University of Michigan
Eric Harper, University of Michigan
Rose Cersonsky, University of Michigan
James Antonaglia, University of Michigan
Chengyu Dai, University of Michigan
Tim Moore, University of Michigan
- GSD 2.0 compatibility
Source code¶
GSD is used to construct trajectory objects from GSD files and is available at https://github.com/glotzerlab/gsd.
The files garnett/gsdhoomd.py
and garnett/pygsd.py
are directly copied from the GSD source code.
GSD is used under the BSD license:
Copyright (c) 2016-2020 The Regents of the University of Michigan
All rights reserved.
Redistribution and use in source and binary forms, with or without
modification, are permitted provided that the following conditions are met:
1. Redistributions of source code must retain the above copyright notice,
this list of conditions and the following disclaimer.
2. Redistributions in binary form must reproduce the above copyright notice,
this list of conditions and the following disclaimer in the documentation
and/or other materials provided with the distribution.
THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND
ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED
WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE
DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE FOR
ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
(INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES;
LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON
ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT
(INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS
SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.